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Michael Harms
Michael Harms
Associate Professor, Institute of Molecular Biology, University of Oregon
Verified email at uoregon.edu - Homepage
Title
Cited by
Year
Bacterial vampirism mediated through taxis to serum
SJ Glenn, Z Gentry-Lear, M Shavlik, MJ Harms, TJ Asaki, A Baylink
bioRxiv: the preprint server for biology, 2023.07. 07.548164, 2024
2024
Navigating contradictions: Salmonella Typhimurium chemotactic responses to conflicting chemoeffector signals show parity with bacterial growth benefits
Z Gentry-Lear, K Franco, M Shavlik, MJ Harms, A Baylink
bioRxiv, 2024.01. 18.576330, 2024
2024
Ancestral Reconstruction and the Evolution of Protein Energy Landscapes
LO Chisholm, KN Orlandi, SR Phillips, MJ Shavlik, MJ Harms
Annual Review of Biophysics 53, 2023
12023
Human Serum is a Potent Chemoattractant for Enterobacteriaceae Species Associated with Gastrointestinal Bleeding
SJ Glenn, Z Gentry-Lear, M Shavlik, MJ Harms, TJ Asaki, A Baylink
bioRxiv, 2023.07. 07.548164, 2023
12023
Bacterial vampirism mediated through chemotaxis.
SJ Glenn, Z Gentry-Lear, M Shavlik, MJ Harms, TJ Asaki, A Baylink
Biorxiv: the Preprint Server for Biology, 2023
2023
Simultaneous Mapping of DNA Binding and Nucleosome Positioning with SpLiT-ChEC
OGB Banks, MJ Harms, JN McKnight, LE McKnight
bioRxiv, 2023
2023
The importance of input sequence set to consensus-derived proteins and their relationship to reconstructed ancestral proteins
C Nixon, SA Lim, M Sternke, D Barrick, M Harms, S Marqusee
bioRxiv, 2023
2023
Disentangling contact and ensemble epistasis in a riboswitch
DR Wonderlick, JR Widom, MJ Harms
Biophysical Journal 122 (9), 1600-1612, 2023
22023
Topiary: Pruning the manual labor from ancestral sequence reconstruction
KN Orlandi, SR Phillips, ZR Sailer, JL Harman, MJ Harms
Protein Science 32 (2), e4551, 2023
42023
Wiederaufbauplan: Wie gelingt der Neuanfang in der Ukraine?
G Poluschkin, R Kirchner, J Bergmann, W Hoyer, M Harms, G Schulze, ...
ifo Schnelldienst 76 (04), 03-28, 2023
12023
Sequence Space Neighborhoods of GFP-like Proteins Show Altered Robustness and Diversity over Evolutionary Time
M Shavlik, M Harms
PROTEIN SCIENCE 32, 2023
2023
Higher-order interactions shape microbial interactions as microbial community complexity increases
MA Morin, AJ Morrison, MJ Harms, RJ Dutton
Scientific Reports 12 (1), 22640, 2022
122022
Probing the origin of prion protein misfolding via reconstruction of ancestral proteins
LM Cortez, AJ Morrison, CR Garen, S Patterson, T Uyesugi, R Petrosyan, ...
Protein Science 31 (12), e4477, 2022
22022
An experimental demonstration of ensemble epistasis in the lac repressor
AJ Morrison, MJ Harms
bioRxiv, 2022.10. 14.512271, 2022
22022
Evolution avoids a pathological stabilizing interaction in the immune protein S100A9
JL Harman, PN Reardon, SM Costello, GD Warren, SR Phillips, ...
Proceedings of the National Academy of Sciences 119 (41), e2208029119, 2022
72022
Comparative analysis and ancestral sequence reconstruction of bacterial sortase family proteins generates functional ancestral mutants with different sequence specificities
JD Valgardson, SA Struyvenberg, ZR Sailer, IM Piper, JE Svendsen, ...
Bacteria 1 (2), 121-135, 2022
32022
Ensemble epistasis: thermodynamic origins of nonadditivity between mutations
AJ Morrison, DR Wonderlick, MJ Harms
Genetics 219 (1), iyab105, 2021
182021
Evolutionary conservation of structural and functional coupling between the BRM AT-hook and bromodomain
BE Lupo, P Chu, MJ Harms, EA Morrison, CA Musselman
Journal of molecular biology 433 (14), 166845, 2021
42021
Were ancestral proteins less specific?
LC Wheeler, MJ Harms
Molecular Biology and Evolution 38 (6), 2227-2239, 2021
102021
A conserved folding nucleus sculpts the free energy landscape of bacterial and archaeal orthologs from a divergent TIM barrel family
R Jain, K Muneeruddin, J Anderson, MJ Harms, SA Shaffer, CR Matthews
Proceedings of the National Academy of Sciences 118 (17), e2019571118, 2021
132021
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